`import_spss`: Importing data from 'SPSS'
Benjamin Becker
2024-11-15
Source:vignettes/import_spss.Rmd
import_spss.Rmdimport_spss() allows importing data from
SPSS (.sav and .zsav files) into
R by using the R package
haven.
This vignette illustrates a typical workflow of importing a
SPSS file using import_spss() and
extractData2(). For illustrative purposes we use a small
example data set from the campus files of the German PISA Plus
assessment. The complete campus files and the original data set can be
accessed here
and here.
Importing
We can import an .sav data set via the
import_spss() function. Checks on variable names (for data
base compatibility) are performed automatically. Changes to the variable
names are reported to the console. This behavior can be suppressed by
setting checkVarNames = FALSE.
sav_path <- system.file("extdata", "pisa.zsav", package = "eatGADS")
gads_obj <- import_spss(sav_path)
GADSdat objects
The resulting object is of the class GADSdat. It is
basically a named list containing the actual data (dat) and
the meta data (labels).
The names of the variables in a GADSdat object can be
accessed via the namesGADS() function. The meta data of
variables can be accessed via the extractMeta()
function.
namesGADS(gads_obj)
#> [1] "idstud" "idschool" "idclass" "schtype" "sameteach"
#> [6] "g8g9" "ganztag" "classsize" "repeated" "gender"
#> [11] "age" "language" "migration" "hisced" "hisei"
#> [16] "homepos" "books" "pared" "computer_age" "internet_age"
#> [21] "int_use_a" "int_use_b" "truancy_a" "truancy_b" "truancy_c"
#> [26] "int_a" "int_b" "int_c" "int_d" "instmot_a"
#> [31] "instmot_b" "instmot_c" "instmot_d" "norms_a" "norms_b"
#> [36] "norms_c" "norms_d" "norms_e" "norms_f" "anxiety_a"
#> [41] "anxiety_b" "anxiety_c" "anxiety_d" "anxiety_e" "selfcon_a"
#> [46] "selfcon_b" "selfcon_c" "selfcon_d" "selfcon_e" "worketh_a"
#> [51] "worketh_b" "worketh_c" "worketh_d" "worketh_e" "worketh_f"
#> [56] "worketh_g" "worketh_h" "worketh_i" "intent_a" "intent_b"
#> [61] "intent_c" "intent_d" "intent_e" "behav_a" "behav_b"
#> [66] "behav_c" "behav_d" "behav_e" "behav_f" "behav_g"
#> [71] "behav_h" "teach_a" "teach_b" "teach_c" "teach_d"
#> [76] "teach_e" "cognact_a" "cognact_b" "cognact_c" "cognact_d"
#> [81] "cognact_e" "cognact_f" "cognact_g" "cognact_h" "cognact_i"
#> [86] "discpline_a" "discpline_b" "discpline_c" "discpline_d" "discpline_e"
#> [91] "relation_a" "relation_b" "relation_c" "relation_d" "relation_e"
#> [96] "belong_a" "belong_b" "belong_c" "belong_d" "belong_e"
#> [101] "belong_f" "belong_g" "belong_h" "belong_i" "attitud_a"
#> [106] "attitud_b" "attitud_c" "attitud_d" "attitud_e" "attitud_f"
#> [111] "attitud_g" "attitud_h" "grade_de" "grade_ma" "grade_bio"
#> [116] "grade_che" "grade_phy" "grade_sci" "ma_pv1" "ma_pv2"
#> [121] "ma_pv3" "ma_pv4" "ma_pv5" "rea_pv1" "rea_pv2"
#> [126] "rea_pv3" "rea_pv4" "rea_pv5" "sci_pv1" "sci_pv2"
#> [131] "sci_pv3" "sci_pv4" "sci_pv5"
extractMeta(gads_obj, vars = c("schtype", "idschool"))
#> varName varLabel format display_width labeled value
#> 2 idschool School-ID F8.0 NA no NA
#> 4 schtype School track F8.0 NA yes 1
#> 5 schtype School track F8.0 NA yes 2
#> 6 schtype School track F8.0 NA yes 3
#> valLabel missings
#> 2 <NA> <NA>
#> 4 Gymnasium (academic track) valid
#> 5 Realschule valid
#> 6 schools with several courses of education validCommonly, the most informative columns are varLabel
(containing variable labels), value (referencing labeled
values), valLabel (containing value labels) and
missings (missing tag: is a labeled value a missing value
("miss") or not ("valid")).
Extracting data from GADSdat
If we want to use the data for analyses in R we have to
extract it from the GADSdat object via the function
extractData2(). In doing so, we have to make two important
decisions: (a) how should values marked as missing values be treated
(convertMiss)? And (b) how should labeled values in general
be treated (labels2character, labels2factor,
labels2ordered, dropPartialLabels)?
If a variable name is not provided under any of
labels2character, labels2factor,
labels2ordered, all value labels of the corresponding
variable are simply dropped. If a variable name is provided under
labels2character, the value labels of the corresponding
variable are applied and the resulting variable is a character variable.
labels2factor converts variables to factor and
labels2ordered converts variables to ordered factors.
See ?extractData2 for more details.
## convert all labeled variables to character
dat1 <- extractData2(gads_obj, labels2character = namesGADS(gads_obj))
dat1[1:5, 1:10]
#> idstud idschool idclass schtype sameteach
#> 1 1 127 392 Realschule Yes
#> 2 2 65 201 schools with several courses of education No
#> 3 3 10 34 Gymnasium (academic track) No
#> 4 4 103 319 schools with several courses of education Yes
#> 5 5 57 179 Realschule Yes
#> g8g9 ganztag classsize repeated gender
#> 1 <NA> No 9 Did not repeat a grade Female
#> 2 <NA> No 10 Did not repeat a grade Female
#> 3 G8 - 8 years to abitur No 28 Did not repeat a grade Male
#> 4 <NA> No 12 Did not repeat a grade Male
#> 5 <NA> Yes 25 Did not repeat a grade Female
## leave labeled variables as numeric
dat2 <- extractData2(gads_obj)
dat2[1:5, 1:10]
#> idstud idschool idclass schtype sameteach g8g9 ganztag classsize repeated
#> 1 1 127 392 2 2 NA 1 9 1
#> 2 2 65 201 3 1 NA 1 10 1
#> 3 3 10 34 1 1 1 1 28 1
#> 4 4 103 319 3 2 NA 1 12 1
#> 5 5 57 179 2 2 NA 2 25 1
#> gender
#> 1 1
#> 2 1
#> 3 2
#> 4 2
#> 5 1
## leave labeled variables as numeric but convert some variables to character and some to factor
dat3 <- extractData2(gads_obj, labels2character = c("gender", "language"),
labels2factor = c("schtype", "sameteach"))
dat3[1:5, 1:10]
#> idstud idschool idclass schtype sameteach
#> 1 1 127 392 Realschule Yes
#> 2 2 65 201 schools with several courses of education No
#> 3 3 10 34 Gymnasium (academic track) No
#> 4 4 103 319 schools with several courses of education Yes
#> 5 5 57 179 Realschule Yes
#> g8g9 ganztag classsize repeated gender
#> 1 NA 1 9 1 Female
#> 2 NA 1 10 1 Female
#> 3 1 1 28 1 Male
#> 4 NA 1 12 1 Male
#> 5 NA 2 25 1 FemaleIn general, we recommend leaving labeled variables as numeric and
converting values with missing codes to NA. Both are the
default behavior for extractData2(). If required, value
labels can always be accessed via using extractMeta() on
the GADSdat object or the data base.